| ID | SAVERM_6985
| Type | CDS
|
| From | 8342842
| nt length | 1710
|
| To | 8344551
| aa length | 569
|
| Gene | dinB
| pI | 5.15
|
| Definition | putative DNA polymerase IV, DNA damage inducible protein
| M.W (Da) | 58673
|
| Note | PF00817: impB/mucB/samB family
| AseI frg. | D
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA modification & repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1380 putative DNA damage inducible protein | 709 | 0.0e+00
|
| sgr | SGR_6149 putative DNA damage inducible protein | 665 | 0.0e+00
|
| sam | SAM23877_1438 DNA polymerase IV | 710 | 0.0e+00
|
| scab | SCAB76311 putative DNA polymerase IV, DNA damage inducible protein | 728 | 0.0e+00
|
| sace | SACE_6234 DNA polymerase IV | 336 | 5.0e-111
|
| nfar | nfa17790 DNA polymerase IV family protein | 332 | 5.3e-92
|
| mtub | gi|15608675 DNA polymerase IV [Mycobacterium tuberculosis H37Rv] | 344 | 7.9e-96
|
| cglu | gi|19553344 COG0389:Nucleotidyltransferase/DNA polymerase involved in DNA repair [Corynebacterium glutamicum] | 308 | 3.4e-85
|
| bsub | BG11737 yqjH; similar to DNA-damage repair protein | 181 | 1.0e-46
|
| ecoli | gi|16128217 DNA polymerase IV [Escherichia coli K12] | 160 | 2.7e-40
|
| paer | PA0923 [gene=dinP] [prot=DNA damage inducible protein P] [comment=PA0923] | 200 | 3.3e-52
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| IMS | 1 | impB/mucB/samB family | 10-158 | 146.0 | 7.3e-43
|
| IMS_C | 1 | impB/mucB/samB family C-terminal domain | 238-346 | 76.0 | 3.6e-21
|
| HHH_5 | 1 | Helix-hairpin-helix domain | 184-218 | 27.1 | 4.3e-06
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1666 | Seems to have no N-terminal signal seq.
|