| ID | SAVERM_7041
| Type | CDS
|
| From | 8400761
| nt length | 606
|
| To | 8401366
| aa length | 201
|
| Gene |
| pI | 5.92
|
| Definition | putative transcriptional regulatory protein
| M.W (Da) | 21632
|
| Note | PF01381: Helix-turn-helix
| AseI frg. | D
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1312 putative transcriptional regulatory protein | 337 | 2.0e-120
|
| sgr | SGR_6244 putative transcriptional regulator | 266 | 1.0e-92
|
| sam | SAM23877_1387 putative transcriptional regulatory protein | 327 | 1.0e-116
|
| scab | SCAB77741 putative transcriptional regulatory protein | 317 | 2.0e-112
|
| sace | SACE_2132 transcriptional regulator, Cro/CI family | 128 | 4.0e-38
|
| nfar | nfa13110 DNA-binding protein | 63 | 9.1e-12
|
| cglu | gi|19553978 COG1396:Predicted transcriptional regulators [Corynebacterium glutamicum] | 63 | 6.6e-12
|
| bsub | BG10754 sinR, sin, flaD; transcriptional regulator of post-exponential-phase responses genes | 51 | 3.2e-08
|
| ecoli | gi|16129393 putative regulator [Escherichia coli K12] | 78 | 3.6e-16
|
| paer | PA2312 [gene=PA2312] [prot=probable transcriptional regulator] [comment=PA2312] | 93 | 8.6e-21
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Cupin_2 | 1 | Cupin domain | 126-194 | 62.8 | 1.7e-17
|
| HTH_3 | 1 | Helix-turn-helix | 26-78 | 47.7 | 1.1e-12
|
| HTH_31 | 1 | Helix-turn-helix domain | 22-78 | 42.9 | 4.3e-11
|
| HTH_19 | 1 | Helix-turn-helix domain | 24-82 | 38.2 | 1e-09
|
| AraC_binding | 1 | AraC-like ligand binding domain | 137-191 | 23.8 | 3.1e-05
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_171060074.1 | XRE family transcriptional regulator [Streptomyces montanus]
| 945 | 6.7e-129 |
| WP_199293083.1 | XRE family transcriptional regulator [Streptomyces sp. GMY02...
| 945 | 8.5e-129 |
| WP_206440275.1 | XRE family transcriptional regulator [Streptomyces scabichel...
| 943 | 1.5e-128 |
| EFF89869.1 | cro/CI family transcriptional regulator [Streptomyces sp. e14]
| 940 | 4.6e-128 |
| GGX99795.1 | transcriptional regulator [Streptomyces minutiscleroticus]
| 938 | 2.2e-127 |
| WP_221358592.1 | XRE family transcriptional regulator [Streptomyces sp. REN17...
| 931 | 9.2e-127 |
| WP_228753935.1 | XRE family transcriptional regulator [Streptomyces solanisca...
| 923 | 1.9e-125 |
| WP_223180178.1 | XRE family transcriptional regulator [Streptomyces sp. TRM S...
| 921 | 3.0e-125 |
| WP_007380498.1 | XRE family transcriptional regulator [Streptomyces sp. SID54...
| 917 | 1.4e-124 |
| WP_202437743.1 | XRE family transcriptional regulator [Streptomyces sp. SID59...
| 916 | 2.0e-124 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2183 | Seems to have no N-terminal signal seq.
|