| ID | SAVERM_7055
| Type | CDS
|
| From | 8413967
| nt length | 1164
|
| To | 8415130
| aa length | 387
|
| Gene | sbcD
| pI | 5.17
|
| Definition | putative ATP-dependent dsDNA exonuclease
| M.W (Da) | 41648
|
| Note | PF00149: Calcineurin-like phosphoesterase
| AseI frg. | D
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA recombination
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1301 putative exonuclease | 669 | 0.0e+00
|
| sgr | SGR_6249 putative exonuclease | 596 | 0.0e+00
|
| sam | SAM23877_1381 putative exonuclease | 665 | 0.0e+00
|
| scab | SCAB77861 putative ATP-dependent dsDNA exonuclease | 610 | 0.0e+00
|
| sace | SACE_0952 putative ATP-dependent dsDNA exonuclease | 364 | 4.0e-125
|
| nfar | nfa47930 sbcD ATP-dependent dsDNA exonuclease | 355 | 4.8e-99
|
| mtub | gi|15608417 hypothetical protein Rv1277 [Mycobacterium tuberculosis H37Rv] | 49 | 4.3e-07
|
| bsub | BG10467 sbcD, yixA; exonuclease sbcD homolog | 144 | 8.7e-36
|
| ecoli | gi|16128383 ATP-dependent dsDNA exonuclease [Escherichia coli K12] | 144 | 9.8e-36
|
| paer | PA4281 [gene=sbcD] [prot=exonuclease SbcD] [comment=PA4281] | 161 | 8.2e-41
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Metallophos | 1 | Calcineurin-like phosphoesterase | 1-95 | 45.1 | 1.5e-11
|
| SbcD_C | 1 | Type 5 capsule protein repressor C-terminal domain | 267-355 | 43.2 | 3.4e-11
|
| Metallophos_2 | 1 | Calcineurin-like phosphoesterase superfamily domain | 1-133 | 31.3 | 2e-07
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1510 | Seems to have no N-terminal signal seq.
|