| ID | SAVERM_7056
| Type | CDS
|
| From | 8415198
| nt length | 3000
|
| To | 8418197
| aa length | 999
|
| Gene | sbcC
| pI | 6.07
|
| Definition | putative ATP-dependent dsDNA exonuclease
| M.W (Da) | 108017
|
| Note | PF02463: RecF/RecN/SMC N terminal domain
| AseI frg. | D
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA recombination
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1300 putative exonuclease | 1162 | 0.0e+00
|
| sgr | SGR_6250 putative exonuclease | 976 | 0.0e+00
|
| sam | SAM23877_1380 putative exonuclease | 1281 | 0.0e+00
|
| scab | SCAB77881 putative ATP-dependent dsDNA exonuclease | 1275 | 0.0e+00
|
| sace | SACE_0953 putative ATP-dependent dsDNA exonuclease | 244 | 6.0e-68
|
| nfar | nfa47920 sbcC ATP-dependent dsDNA exonuclease | 575 | 6.6e-165
|
| bsub | BG13088 yirY; similar to DNA exonuclease | 121 | 1.8e-28
|
| ecoli | gi|16128382 ATP-dependent dsDNA exonuclease [Escherichia coli K12] | 180 | 3.6e-46
|
| paer | PA4282 [gene=PA4282] [prot=probable exonuclease] [comment=PA4282] | 205 | 1.5e-53
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| AAA_23 | 1 | AAA domain | 5-195 | 86.3 | 3.6e-24
|
| SbcCD_C | 1 | Putative exonuclease SbcCD, C subunit | 891-956 | 51.6 | 7.9e-14
|
| AAA_27 | 1 | AAA domain | 1-55 | 33.6 | 2.6e-08
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1723 | Seems to have no N-terminal signal seq.
|