| ID | SAVERM_7136
| Type | CDS
|
| From | 8497107
| nt length | 1539
|
| To | 8495569
| aa length | 512
|
| Gene | ligB
| pI | 6.7
|
| Definition | putative DNA ligase
| M.W (Da) | 54366
|
| Note | PF01068: ATP dependent DNA ligase domain
| AseI frg. | D
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA replication
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1202 putative DNA ligase | 796 | 0.0e+00
|
| sgr | SGR_6320 putative DNA ligase | 664 | 0.0e+00
|
| sam | SAM23877_1283 putative DNA ligase | 783 | 0.0e+00
|
| scab | SCAB78681 putative DNA ligase | 836 | 0.0e+00
|
| sace | SACE_0911 DNA ligase I, ATP-dependent (dnl1) | 410 | 9.0e-140
|
| nfar | nfa52520 ATP-dependent DNA ligase | 447 | 1.3e-126
|
| mtub | gi|15610199 DNA ligase [Mycobacterium tuberculosis H37Rv] | 495 | 2.4e-141
|
| ecoli | gi|16131653 acrylsulfatase-like enzyme, posttranslationally activated by AslB [Escherichia coli K12] | 33 | 3.4e-02
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DNA_ligase_A_M | 1 | ATP dependent DNA ligase domain | 186-382 | 151.4 | 2.3e-44
|
| DNA_ligase_A_C | 1 | ATP dependent DNA ligase C terminal region | 401-492 | 56.1 | 4.2e-15
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1086 | Seems to have no N-terminal signal seq.
|