| ID | SAVERM_7167
| Type | CDS
|
| From | 8534830
| nt length | 591
|
| To | 8534240
| aa length | 196
|
| Gene |
| pI | 6.13
|
| Definition | putative TetR-family transcriptional regulator
| M.W (Da) | 20699
|
| Note | PF00440: Bacterial regulatory proteins, tetR family
| AseI frg. | D
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| sgr | SGR_1965 putative TetR-family transcriptional regulator | 90 | 2.0e-23
|
| sam | SAM23877_6940 hypothetical protein | 134 | 2.0e-40
|
| scab | SCAB83151 putative TetR-family transcriptional regulator | 242 | 7.0e-83
|
| sace | SACE_2947 TetR-family transcriptional regulator | 226 | 1.0e-76
|
| nfar | nfa48140 transcriptional regulator | 107 | 7.0e-25
|
| mtub | gi|15607337 POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis H37Rv] | 141 | 2.6e-35
|
| bsub | BG11108 yxaF, s14F; similar to unknown proteins | 100 | 7.5e-23
|
| paer | PA0475 [gene=PA0475] [prot=probable transcriptional regulator] [comment=PA0475] | 114 | 5.9e-27
|
*sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| TetR_N | 1 | Bacterial regulatory proteins, tetR family | 12-58 | 37.6 | 1.3e-09
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_184905774.1 | TetR/AcrR family transcriptional regulator [Streptomyces aur...
| 872 | 7.8e-118 |
| WP_023544444.1 | TetR/AcrR family transcriptional regulator [Streptomyces ros...
| 867 | 4.6e-117 |
| WP_123963541.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 862 | 2.3e-116 |
| NUP45330.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp.]
| 862 | 2.8e-116 |
| WP_194042945.1 | TetR/AcrR family transcriptional regulator [Streptomyces fer...
| 861 | 3.4e-116 |
| WP_089505613.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 856 | 2.1e-115 |
| WP_030948602.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 852 | 6.7e-115 |
| NUP43984.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp.] >gb...
| 851 | 1.2e-114 |
| WP_232655694.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 849 | 2.2e-114 |
| WP_131560937.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 846 | 7.3e-114 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.2359 | Seems to have no N-terminal signal seq.
|