| ID | SAVERM_7214
| Type | CDS
|
| From | 8594708
| nt length | 2220
|
| To | 8592489
| aa length | 739
|
| Gene | icdA
| pI | 4.65
|
| Definition | isocitrate dehydrogenase
| M.W (Da) | 79489
|
| Note | PF03971: Monomeric isocitrate dehydrogenase
| AseI frg. | D
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | TCA cycle
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO7000 isocitrate dehydrogenase | 1346 | 0.0e+00
|
| sgr | SGR_1224 putative isocitrate dehydrogenase | 1282 | 0.0e+00
|
| sam | SAM23877_6536 Isocitrate dehydrogenase [NADP] | 1350 | 0.0e+00
|
| scab | SCAB12211 putative isocitrate dehydrogenase | 1366 | 0.0e+00
|
| mtub | gi|15607208 PROBABLE ISOCITRATE DEHYDROGENASE [NADP] ICD2 (OXALOSUCCINATE DECARBOXYLASE) (IDH) (NADP+-SPECIFIC ICDH) (IDP) [Mycobacterium tuberculosis H37Rv] | 870 | 0.0e+00
|
| cglu | gi|19551894 COG2838:Monomeric isocitrate dehydrogenase [Corynebacterium glutamicum] | 1000 | 0.0e+00
|
| paer | PA2624 [gene=idh] [prot=isocitrate dehydrogenase] [comment=PA2624] | 888 | 0.0e+00
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| IDH | 1 | Monomeric isocitrate dehydrogenase | 5-735 | 1272.7 | 0
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202498712.1 | NADP-dependent isocitrate dehydrogenase [Streptomyces sp. SI...
| 3732 | 0.0e+00 |
| WP_095937961.1 | NADP-dependent isocitrate dehydrogenase [Streptomyces sp. Tu...
| 3589 | 0.0e+00 |
| KJY43896.1 | isocitrate dehydrogenase [Streptomyces sp. NRRL B-1568]
| 3589 | 0.0e+00 |
| WP_028798833.1 | NADP-dependent isocitrate dehydrogenase [Streptomyces sp. 14...
| 3583 | 0.0e+00 |
|
| 3580 | 0.0e+00 |
| WP_189185722.1 | NADP-dependent isocitrate dehydrogenase [Streptomyces albifl...
| 3577 | 0.0e+00 |
|
| 3556 | 0.0e+00 |
| WP_099506605.1 | MULTISPECIES: NADP-dependent isocitrate dehydrogenase [Strep...
| 3553 | 0.0e+00 |
| NGO15275.1 | NADP-dependent isocitrate dehydrogenase [Streptomyces scabichelin...
| 3551 | 0.0e+00 |
|
| 3546 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1084 | Seems to have no N-terminal signal seq.
|