| ID | SAVERM_7245
| Type | CDS
|
| From | 8640232
| nt length | 420
|
| To | 8640651
| aa length | 139
|
| Gene | panD
| pI | 5.5
|
| Definition | putative L-aspartate 1-decarboxylase
| M.W (Da) | 14704
|
| Note | PF02261: Aspartate decarboxylase
| AseI frg. | D
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of coenzymes & prosthetic groups
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO0978 L-aspartate-alpha-decarboxylase | 229 | 7.0e-80
|
| sgr | SGR_775 putative L-aspartate 1-decarboxylase | 236 | 2.0e-82
|
| sam | SAM23877_6575 Aspartate 1-decarboxylase | 237 | 6.0e-83
|
| scab | SCAB11841 putative L-aspartate 1-decarboxylase | 229 | 1.0e-79
|
| sace | SACE_0407 aspartate 1-decarboxylase precursor | 195 | 5.0e-66
|
| nfar | nfa4070 panD aspartate 1-decarboxylase | 184 | 1.9e-48
|
| mtub | gi|15610737 aspartate 1-decarboxylase precursor [Mycobacterium tuberculosis H37Rv] | 181 | 1.2e-47
|
| cglu | gi|19551386 COG0853:Aspartate 1-decarboxylase [Corynebacterium glutamicum] | 182 | 4.0e-48
|
| bsub | BG11493 panD; aspartate 1-decarboxylase [EC:4.1.1.11] | 138 | 1.1e-34
|
| ecoli | gi|16128124 aspartate 1-decarboxylase precursor [Escherichia coli K12] | 121 | 1.5e-29
|
| paer | PA4731 [gene=panD] [prot=aspartate 1-decarboxylase precursor] [comment=PA4731] | 95 | 1.6e-21
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Asp_decarbox | 1 | Aspartate decarboxylase | 1-114 | 174.7 | 4.5e-52
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2410 | Seems to have no N-terminal signal seq.
|