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IDSAVERM_7292 TypeCDS
From8696544 nt length549
To8695996 aa length182
Genesig56 pI9.65
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)20252
Notesimilar to SCO0942, PF04545: Sigma-70, region 4 AseI frg.D
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO0942 putative RNA polymerase sigma factor2818.0e-99
sgrSGR_718 putative RNA polymerase ECF-subfamily sigma factor2125.0e-71
samSAM23877_6598 putative RNA polymerase sigma factor2582.0e-89
scabSCAB11621 putative RNA polymerase ECF-subfamily sigma factor3003.0e-106

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 223-9056.31.8e-15

Sigma70_r41Sigma-70, region 4124-17249.61.9e-13

Sigma70_r4_21Sigma-70, region 4119-17040.71.3e-10

Sigma70_ECF1ECF sigma factor44-16630.62.7e-07

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_055491205.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6562.4e-85
WP_059126833.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6482.9e-84
WP_040895743.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 6484.0e-84
WP_164416334.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6466.0e-84
WP_030378468.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 6467.4e-84
WP_053744127.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6441.4e-83
WP_095750468.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6432.0e-83
NUO40680.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp.] >g... 6422.9e-83
WP_105969726.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ge... 6423.0e-83
WP_188179953.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6423.2e-83

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.4102 Seems to have no N-terminal signal seq.