| ID | SAVERM_7306
| Type | CDS
|
| From | 8715093
| nt length | 894
|
| To | 8714200
| aa length | 297
|
| Gene |
| pI | 8.76
|
| Definition | putative LysR-family transcriptional regulator
| M.W (Da) | 32468
|
| Note | PF03466: LysR substrate binding domain
| AseI frg. | D
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO0925 putative lysR-family transcriptional regulator | 530 | 0.0e+00
|
| sgr | SGR_708 putative LysR-family transcriptional regulator | 471 | 2.0e-170
|
| sam | SAM23877_6615 putative lysR-family transcriptional regulator | 526 | 0.0e+00
|
| scab | SCAB11491 putative LysR-family transcriptional regulator | 540 | 0.0e+00
|
| nfar | nfa18920 transcriptional regulator | 161 | 5.6e-41
|
| ecoli | gi|16128323 cyn operon positive regulator [Escherichia coli K12] | 147 | 6.4e-37
|
| paer | PA5029 [gene=PA5029] [prot=probable transcriptional regulator] [comment=PA5029] | 148 | 6.7e-37
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| LysR_substrate | 1 | LysR substrate binding domain | 90-296 | 159.9 | 4.7e-47
|
| HTH_1 | 1 | Bacterial regulatory helix-turn-helix protein, lysR family | 6-65 | 81.1 | 3.8e-23
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_217452679.1 | LysR substrate-binding domain-containing protein [Streptomyc...
| 1319 | 0.0e+00 |
| SDM33175.1 | DNA-binding transcriptional regulator, LysR family [Streptomyces...
| 1315 | 0.0e+00 |
| WP_184907319.1 | LysR substrate-binding domain-containing protein [Streptomyc...
| 1314 | 0.0e+00 |
|
| 1314 | 0.0e+00 |
| WP_075027892.1 | MULTISPECIES: LysR substrate-binding domain-containing prote...
| 1312 | 0.0e+00 |
| WP_168498548.1 | LysR substrate-binding domain-containing protein [Streptomyc...
| 1310 | 0.0e+00 |
| WP_054227929.1 | MULTISPECIES: LysR substrate-binding domain-containing prote...
| 1310 | 0.0e+00 |
| WP_190038631.1 | LysR substrate-binding domain-containing protein [Streptomyc...
| 1310 | 0.0e+00 |
| GGN58014.1 | LysR family transcriptional regulator [Streptomyces albiflavesce...
| 1309 | 0.0e+00 |
| WP_055491195.1 | LysR substrate-binding domain-containing protein [Streptomyc...
| 1309 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1553 | Seems to have no N-terminal signal seq.
|