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IDSAVERM_741 TypeCDS
From890067 nt length840
To890906 aa length279
Genesig8 pI4.65
Definitionputative RNA polymerase sigma factor M.W (Da)31454
Notesimilar to SCO0600:sigJ, RNA polymerase alternative sigma factor, PF04545: Sigma-70, region 4 AseI frg.A
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO0600 sig8 RNA polymerase sigma factor sig84418.0e-159
sgrSGR_6652 RNA polymerase sigma factor3639.0e-128
samSAM23877_0517 RNA polymerase sigma factor4452.0e-160
scabSCAB87111 putative RNA polymerase sigma factor4381.0e-157

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4225-27368.13.1e-19

Sigma70_r21Sigma-70 region 256-12657.11.1e-15

Sigma70_r31Sigma-70 region 3137-20245.46.1e-12

Sigma70_r4_21Sigma-70, region 4222-27136.92e-09

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_097282461.1 RNA polymerase sigma factor SigF [Streptomyces sp. OK228] >e... 11251.2e-153
WP_033279277.1 RNA polymerase sigma factor SigF [Streptomyces sp. NRRL F-52... 11147.0e-152
WP_164375738.1 RNA polymerase sigma factor SigF [Streptomyces sp. SID14446]... 11069.3e-151
WP_168531861.1 RNA polymerase sigma factor SigF [Streptomyces sp. RPA4-2] >... 11051.1e-150
WP_081224439.1 RNA polymerase sigma factor SigF [Streptomyces sp. M41(2017)... 11041.5e-150
WP_067385927.1 RNA polymerase sigma factor SigF [Streptomyces olivochromoge... 11032.0e-150
WP_093628100.1 RNA polymerase sigma factor SigF [Streptomyces sp. 3213.3] >... 11023.5e-150
WP_148009631.1 RNA polymerase sigma factor SigF [Streptomyces sp. me109] >l... 11015.1e-150
WP_095851765.1 RNA polymerase sigma factor SigF [Streptomyces sp. Ag82_O1-1... 11015.6e-150
WP_081221248.1 RNA polymerase sigma factor SigF [Streptomyces sp. M41(2017)... 11006.2e-150

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.2052 Seems to have no N-terminal signal seq.