| ID | SAVERM_7440
| Type | CDS
|
| From | 8872604
| nt length | 1044
|
| To | 8871561
| aa length | 347
|
| Gene |
| pI | 5
|
| Definition | putative DNA polymerase beta chain
| M.W (Da) | 37872
|
| Note | PF02231: PHP domain N-terminal region
| AseI frg. | D
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA replication
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO0789 conserved hypothetical protein | 578 | 0.0e+00
|
| sgr | SGR_483 putative DNA polymerase beta chain | 474 | 6.0e-170
|
| sam | SAM23877_6731 putative phosphoesterase | 585 | 0.0e+00
|
| scab | SCAB9211 putative DNA polymerase beta chain | 567 | 0.0e+00
|
| sace | SACE_3496 putative histidinol phosphatase | 423 | 3.0e-150
|
| nfar | nfa41810 DNA polymerase | 404 | 6.1e-114
|
| mtub | gi|15610992 hypothetical protein Rv3856c [Mycobacterium tuberculosis H37Rv] | 365 | 3.1e-102
|
| bsub | BG12327 yshC; similar to DNA polymerase beta | 156 | 1.5e-39
|
| ecoli | gi|16128997 hypothetical protein b1034 [Escherichia coli K12] | 41 | 6.0e-05
|
| paer | PA3385 [gene=PA3385] [prot=hypothetical protein] [comment=PA3385] | 33 | 2.3e-02
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| HHH_8 | 1 | Helix-hairpin-helix domain | 7-71 | 54.1 | 1.4e-14
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_189185489.1 | PHP domain-containing protein [Streptomyces albiflavescens] ...
| 1370 | 0.0e+00 |
| WP_225632752.1 | PHP domain-containing protein [Streptomyces solaniscabiei]
| 1369 | 0.0e+00 |
| WP_190177715.1 | PHP domain-containing protein [Streptomyces naganishii] >dbj...
| 1359 | 0.0e+00 |
| WP_190039394.1 | PHP domain-containing protein [Streptomyces fructofermentans...
| 1358 | 0.0e+00 |
| WP_095938114.1 | PHP domain-containing protein [Streptomyces sp. Tue6028] >gb...
| 1354 | 0.0e+00 |
| WP_161168086.1 | PHP domain-containing protein [Streptomyces sp. SID5910] >gb...
| 1354 | 0.0e+00 |
| WP_190855047.1 | PHP domain-containing protein [Streptomyces glomeroaurantiac...
| 1352 | 0.0e+00 |
| BCL25958.1 | PHP domain-containing protein [Streptomyces glomeroaurantiacus]
| 1350 | 0.0e+00 |
| GHA61447.1 | PHP domain-containing protein [Streptomyces tauricus]
| 1350 | 0.0e+00 |
| WP_189778669.1 | PHP domain-containing protein [Streptomyces tauricus]
| 1350 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2022 | Seems to have no N-terminal signal seq.
|