| ID | SAVERM_7471
| Type | CDS
|
| From | 8898303
| nt length | 555
|
| To | 8897749
| aa length | 184
|
| Gene |
| pI | 6.68
|
| Definition | putative TetR-family transcriptional regulator
| M.W (Da) | 20339
|
| Note | PF00440: Bacterial regulatory proteins, tetR family
| AseI frg. | D
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO0772 putative regulatory protein | 234 | 6.0e-80
|
| sgr | SGR_5901 putative TetR-family transcriptional regulator | 93 | 9.0e-25
|
| sam | SAM23877_6754 putative regulatory protein | 256 | 8.0e-89
|
| sace | SACE_5604 TetR-family transcriptional regulator | 176 | 3.0e-57
|
| nfar | nfa21280 transcriptional regulator | 81 | 4.8e-17
|
| mtub | gi|15610309 PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR/ACRR-FAMILY) [Mycobacterium tuberculosis H37Rv] | 83 | 9.9e-18
|
| cglu | gi|19554126 COG1309:Transcriptional regulator [Corynebacterium glutamicum] | 78 | 1.7e-16
|
| paer | PA3034 [gene=PA3034] [prot=probable transcriptional regulator] [comment=PA3034] | 96 | 1.5e-21
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| TetR_N | 1 | Bacterial regulatory proteins, tetR family | 11-55 | 39.4 | 3.6e-10
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_208778275.1 | TetR/AcrR family transcriptional regulator [Streptomyces gri...
| 742 | 1.8e-98 |
| QIZ00101.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp. S1D4...
| 729 | 2.1e-96 |
| WP_190232041.1 | TetR/AcrR family transcriptional regulator [Streptomyces umb...
| 729 | 2.2e-96 |
| WP_067360160.1 | TetR/AcrR family transcriptional regulator [Streptomyces oli...
| 729 | 2.2e-96 |
| WP_059129734.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 725 | 8.5e-96 |
| WP_189844158.1 | TetR/AcrR family transcriptional regulator [Streptomyces umb...
| 725 | 9.9e-96 |
| WP_220295700.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 722 | 2.1e-95 |
| WP_188288691.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 721 | 3.7e-95 |
| WP_151475741.1 | TetR/AcrR family transcriptional regulator [Streptomyces alb...
| 721 | 4.0e-95 |
| WP_161068504.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 720 | 4.9e-95 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3026 | Seems to have no N-terminal signal seq.
|