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IDSAVERM_893 TypeCDS
From1071857 nt length204
To1071654 aa length67
GenecspD2 pI4.54
Definitionputative cold shock protein M.W (Da)7208
NotePF00313: 'Cold-shock' DNA-binding domain AseI frg.A
SignalP v.4.0Non-secretory protein | plot Categoryadaptation to atypical conditions


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
sgrSGR_3512 putative cold shock protein1335.0e-44
scabSCAB43471 putative cold shock protein1323.0e-43
nfarnfa42250 cold shock protein1062.9e-25

*sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

CSD1'Cold-shock' DNA-binding domain3-66105.77.5e-31

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_138906060.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3468.5e-42
WP_073502486.1 cold-shock protein [Streptomyces paucisporeus] >emb 3451.2e-41
WP_151476138.1 cold-shock protein [Streptomyces albicerus] 3451.4e-41
3441.7e-41
WP_138901082.1 cold-shock protein [Streptomyces albidochromogenes] 3441.9e-41
WP_067228799.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3432.4e-41
WP_112448209.1 MULTISPECIES: cold-shock protein [unclassified Streptomyces]... 3432.6e-41
WP_069463829.1 cold-shock protein [Streptomyces rubidus] >emb 3432.9e-41
WP_189980143.1 cold-shock protein [Streptomyces capoamus] >dbj 3423.4e-41
WP_100105551.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3423.4e-41

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.3417 Seems to have no N-terminal signal seq.