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IDSAVERM_93 TypeCDS
From103255 nt length492
To103746 aa length163
Genesig2 pI10.63
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)18892
Notesimilar to SCO3736, PF04542: Sigma-70 region 2 AseI frg.A
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO3736 putative RNA polymerase ECF sigma factor2841.0e-100
samSAM23877_3909 RNA polymerase ECF sigma factor2834.0e-100
scabSCAB23321 putative RNA polymerase sigma factor2872.0e-101

*coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 212-7642.63.5e-11

Sigma70_r4_21Sigma-70, region 4101-15141.57.4e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_095852339.1 RNA polymerase sigma factor [Streptomyces sp. Ag82_O1-15] >g... 7111.8e-94
WP_054235333.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] >gb... 7111.8e-94
WP_148010709.1 RNA polymerase sigma factor [Streptomyces sp. me109] >lcl 7094.6e-94
WP_168530459.1 RNA polymerase sigma factor [Streptomyces sp. RPA4-2] >gb 7085.2e-94
WP_055625662.1 RNA polymerase sigma factor [Streptomyces hirsutus] 7077.7e-94
WP_166628957.1 RNA polymerase sigma factor [Streptomyces sp. GC420] >gb 7078.5e-94
WP_059420328.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] >lc... 7032.9e-93
WP_055597981.1 RNA polymerase sigma factor [Streptomyces hirsutus] 7033.0e-93
WP_103839396.1 RNA polymerase sigma factor [Streptomyces sp. Ru72] >gb 7025.2e-93
WP_037674673.1 RNA polymerase sigma factor [Streptomyces griseus] 7008.9e-93

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.0982 Seems to have no N-terminal signal seq.