-- | --

IDSAVERM_961 TypeCDS
From1220243 nt length1146
To1221388 aa length381
Genesig12 pI5.9
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)41324
NotePF04542: Sigma-70 region 2 AseI frg.A
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO4452 hypothetical protein5770.0e+00
sgrSGR_6932 putative RNA polymerase ECF-subfamily sigma factor5860.0e+00
samSAM23877_0654 hypothetical protein5770.0e+00
scabSCAB87051 putative RNA polymerase ECF-subfamily sigma factor5890.0e+00
saceSACE_6258 RNA polymerase sigma factor6170.0e+00
nfarnfa28080 sigma factor5638.8e-162

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 25-6837.21.7e-09

Sigma70_r4_21Sigma-70, region 498-14832.25.8e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_108150492.1 RNA polymerase subunit sigma-24 [Streptomyces lunaelactis] >... 14160.0e+00
NUL03864.1 RNA polymerase subunit sigma-24 [Streptomyces lunaelactis] 14110.0e+00
NUK02601.1 RNA polymerase subunit sigma-24 [Streptomyces lunaelactis] >gb 14100.0e+00
NUK64848.1 RNA polymerase subunit sigma-24 [Streptomyces lunaelactis] 14030.0e+00
WP_127355448.1 RNA polymerase subunit sigma-24 [Streptomyces sp. LAM7114] 14010.0e+00
WP_086574335.1 MULTISPECIES: RNA polymerase subunit sigma-24 [Streptomyces]... 14000.0e+00
WP_089006641.1 RNA polymerase subunit sigma-24 [Micromonospora viridifacien... 13990.0e+00
WP_207247666.1 RNA polymerase subunit sigma-24 [Streptomyces triculaminicus... 13990.0e+00
WP_035731191.1 MULTISPECIES: RNA polymerase sigma24 factor [unclassified Fr... 13990.0e+00
WP_224737689.1 RNA polymerase subunit sigma-24 [Streptomyces sp. PSKA30] >l... 13990.0e+00

PSORT result

LocalizationCertaintyPSORT said
outside0.3000 Seems to have a cleavable N-term signal seq.