| ID | SAVERM_963
| Type | CDS
|
| From | 1222029
| nt length | 1134
|
| To | 1223162
| aa length | 377
|
| Gene | fdhA
| pI | 5.13
|
| Definition | putative glutathione-independent formaldehyde dehydrogenase
| M.W (Da) | 40316
|
| Note | PF00107: Zinc-binding dehydrogenase
| AseI frg. | A
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | specific pathways
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4055 putative alcohol dehydrogenase | 692 | 0.0e+00
|
| sgr | SGR_6670 putative dehydrogenase | 229 | 2.0e-72
|
| sam | SAM23877_6360 S-(hydroxymethyl)glutathione dehydrogenase | 238 | 4.0e-76
|
| scab | SCAB13601 putative glutathione-independent formaldehyde dehydrogenase | 243 | 9.0e-78
|
| sace | SACE_6562 glutathione-independent formaldehyde dehydrogenase | 610 | 0.0e+00
|
| nfar | nfa20010 dehydrogenase | 233 | 2.7e-62
|
| bsub | BG11471 yycR; similar to formaldehyde dehydrogenase | 291 | 3.3e-80
|
| ecoli | gi|16128591 putative dehydrogenase, NAD(P)-binding [Escherichia coli K12] | 238 | 4.9e-64
|
| paer | PA5421 [gene=fdhA] [prot=glutathione-independent formaldehyde dehydrogenase] [comment=PA5421] | 308 | 4.0e-85
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| ADH_N | 1 | Alcohol dehydrogenase GroES-like domain | 25-137 | 102.4 | 1.1e-29
|
| ADH_zinc_N | 1 | Zinc-binding dehydrogenase | 185-255 | 39.2 | 5.2e-10
|
| ADH_N_assoc | 1 | Alcohol dehydrogenase GroES-associated | 1-23 | 36.8 | 2.5e-09
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_099925925.1 | MULTISPECIES: glutathione-independent formaldehyde dehydroge...
| 1876 | 0.0e+00 |
| WP_067375114.1 | glutathione-independent formaldehyde dehydrogenase [Streptom...
| 1871 | 0.0e+00 |
| WP_075029602.1 | glutathione-independent formaldehyde dehydrogenase [Streptom...
| 1867 | 0.0e+00 |
| WP_168487488.1 | glutathione-independent formaldehyde dehydrogenase [Streptom...
| 1864 | 0.0e+00 |
| WP_095858360.1 | MULTISPECIES: glutathione-independent formaldehyde dehydroge...
| 1864 | 0.0e+00 |
| QIY93462.1 | alcohol dehydrogenase catalytic domain-containing protein [Strept...
| 1863 | 0.0e+00 |
| WP_054233454.1 | MULTISPECIES: glutathione-independent formaldehyde dehydroge...
| 1862 | 0.0e+00 |
| WP_168532901.1 | glutathione-independent formaldehyde dehydrogenase [Streptom...
| 1855 | 0.0e+00 |
| WP_099503210.1 | MULTISPECIES: glutathione-independent formaldehyde dehydroge...
| 1854 | 0.0e+00 |
| GHD62446.1 | alcohol dehydrogenase [Streptomyces mirabilis]
| 1853 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3622 | Seems to have no N-terminal signal seq.
|