-- | --

IDSCAB13181 TypeCDS
From8673077 nt length2385
To8670693 aa length794
Gene pI7.18
Definitionputative transcription accessory protein M.W (Da)85400
Note AseI frg.G
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_1669 putative transcription accessory protein13830.0e+00
coelSCO6743 putative transcriptional accessory protein13230.0e+00
sgrSGR_984 putative transcription accessory protein12380.0e+00
saceSACE_5346 RNA binding S1:resolvase, RNase H-like fold11430.0e+00
nfarnfa41490 putative RNA-binding protein10280.0e+00

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Tex_N1Tex-like protein N-terminal domain16-199222.13.2e-66

Tex_YqgF1Tex protein YqgF-like domain333-458176.32.8e-52

HHH_31Helix-hairpin-helix motif498-56297.05e-28

S11S1 RNA binding domain658-72760.81.1e-16

HHH_71Helix-hairpin-helix motif471-56332.01.1e-07

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_060905954.1 RNA-binding transcriptional accessory protein, partial [Stre... 32620.0e+00
WP_037725442.1 RNA-binding transcriptional accessory protein [Streptomyces ... 32600.0e+00
WP_061451295.1 RNA-binding transcriptional accessory protein, partial [Stre... 32590.0e+00
WP_059080114.1 RNA-binding transcriptional accessory protein [Streptomyces ... 32160.0e+00
WP_046916802.1 RNA-binding transcriptional accessory protein, partial [Stre... 31610.0e+00
WP_050398343.1 RNA-binding transcriptional accessory protein, partial [Stre... 31600.0e+00
WP_005484638.1 RNA-binding transcriptional accessory protein [Streptomyces ... 31510.0e+00
WP_060882635.1 RNA-binding transcriptional accessory protein, partial [Stre... 31380.0e+00
WP_055537848.1 RNA-binding transcriptional accessory protein [Streptomyces ... 31380.0e+00
WP_055714018.1 RNA-binding transcriptional accessory protein [Streptomyces ... 31370.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear