-- | --

IDSCAB26171 TypeCDS
From7168766 nt length588
To7169353 aa length195
GenerimM pI4.01
Definitionputative 16S rRNA processing protein M.W (Da)21253
Note AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_2642 putative 16S rRNA processing protein3145.0e-87
coelSCO5593 hypothetical protein3144.0e-87
sgrSGR_1887 putative 16S rRNA processing protein2822.0e-77
saceSACE_6051 16S rRNA processing protein1422.0e-35
nfarnfa41550 putative 16S rRNA processing protein1338.0e-33

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

RimM1RimM N-terminal domain5-8382.51.7e-23

PRC1PRC-barrel domain93-16633.14.1e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_046917013.1 ribosome maturation factor RimM [Streptomyces stelliscabiei]... 8701.4e-118
WP_005479811.1 ribosome maturation factor RimM [Streptomyces bottropensis] ... 8622.1e-117
WP_046705183.1 ribosome maturation factor RimM [Streptomyces europaeiscabie... 8344.0e-113
WP_037696012.1 ribosome maturation factor RimM [Streptomyces scabiei] >gb 8162.7e-110
WP_059082595.1 ribosome maturation factor RimM [Streptomyces scabiei] >dbj 8144.4e-110
WP_079659229.1 ribosome maturation factor RimM [Streptomyces sp. 3124.6] >e... 7927.4e-107
WP_004924852.1 ribosome maturation factor RimM [Streptomyces griseoflavus] ... 7874.7e-106
WP_069773285.1 ribosome maturation factor RimM [Streptomyces sp. LUP30] 7857.5e-106
WP_046258838.1 ribosome maturation factor RimM [Streptomyces sp. WM6386] >g... 7831.2e-105
WP_067164761.1 ribosome maturation factor RimM [Streptomyces sp. ERV7] >gb 7851.2e-105

PSORT result

LocalizationCertaintyPSORT said
Not Clear