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IDSCAB30101 TypeCDS
From6725097 nt length1167
To6723931 aa length388
Genesig pI4.95
Definitionputative RNA polymerase sigma factor M.W (Da)42498
Note AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3013 putative RNA polymerase sigma factor, sigH5877.0e-169
coelSCO5243 sig1 RNA polymerase sigma factor5645.0e-162
sgrSGR_2271 RNA polymerase sigma factor4863.0e-138
saceSACE_5686 RNA polymerase sigma factor2764.0e-75
nfarnfa36050 putative sigma factor2433.0e-65

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 2168-23775.32.1e-21

Sigma70_r41Sigma-70, region 4333-38264.73.6e-18

Sigma70_r31Sigma-70 region 3250-30758.25.8e-16

Sigma70_r4_21Sigma-70, region 4333-38037.01.8e-09

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_079064654.1 RNA polymerase sigma factor SigF [Streptomyces scabiei] 18040.0e+00
WP_079081621.1 RNA polymerase sigma factor SigF [Streptomyces scabiei] 17900.0e+00
WP_079024120.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 17140.0e+00
WP_078935517.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 17000.0e+00
WP_005480410.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 16970.0e+00
WP_078907635.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 16930.0e+00
WP_086758369.1 RNA polymerase sigma factor SigF [Streptomyces scabiei] 16390.0e+00
WP_086798574.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 16350.0e+00
WP_078936951.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 16350.0e+00
WP_078853593.1 MULTISPECIES: SigB/SigF/SigG family RNA polymerase sigma fac... 16350.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear