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IDSCAB31151 TypeCDS
From6612620 nt length660
To6613279 aa length219
Genesig pI7.35
Definitionputative RNA polymerase sigma factor M.W (Da)24428
Note AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3117 putative RNA polymerase ECF-subfamily sigma factor3792.0e-106
coelSCO5147 putative ECF-subfamily sigma factor3892.0e-109
sgrSGR_2378 putative RNA polymerase ECF-subfamily sigma factor3745.0e-105
saceSACE_1037 putative ECF family RNA polymerase sigma factor2477.0e-67
nfarnfa47290 putative sigma factor2531.0e-68

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 236-10173.76.5e-21

Sigma70_r4_21Sigma-70, region 4134-18561.25.1e-17

Sigma70_r41Sigma-70, region 4138-18748.93.1e-13

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_046773796.1 RNA polymerase sigma factor SigE [Streptomyces scabiei] 11485.9e-160
KND27869.1 RNA polymerase sigma factor SigE [Streptomyces stelliscabiei] 11458.8e-160
GAQ61212.1 ECF RNA polymerase sigma factor SigE [Streptomyces scabiei] 11462.1e-159
KFF99882.1 RNA polymerase sigma factor SigE [Streptomyces scabiei] 11422.5e-159
WP_046913421.1 RNA polymerase sigma factor SigE [Streptomyces stelliscabiei... 11408.9e-159
WP_046706113.1 MULTISPECIES: RNA polymerase sigma factor SigE [Streptomyces... 11381.7e-158
WP_086755380.1 RNA polymerase sigma factor SigE [Streptomyces scabiei] 11372.6e-158
WP_005480569.1 RNA polymerase sigma factor SigE [Streptomyces bottropensis]... 11372.9e-158
WP_086750467.1 RNA polymerase sigma factor SigE [Streptomyces scabiei] 11339.3e-158
SFO00701.1 RNA polymerase, sigma 29 subunit, SigE [Streptomyces sp. cf124] 11041.8e-153

PSORT result

LocalizationCertaintyPSORT said
Not Clear