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IDSCAB34351 TypeCDS
From6270903 nt length495
To6270409 aa length164
Genesig pI10.97
Definitionputative RNA polymerase sigma factor M.W (Da)18154
Note AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3304 putative RNA polymerase ECF-subfamily sigma factor2243.0e-60
coelSCO4960 hypothetical protein2037.0e-54
sgrSGR_2576 putative RNA polymerase ECF-subfamily sigma factor1244.0e-30

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 499-14330.51.7e-07

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_037723711.1 DNA-directed RNA polymerase sigma-70 factor [Streptomyces sc... 5862.1e-76
WP_041669272.1 DNA-directed RNA polymerase sigma-70 factor [Streptomyces sc... 5852.9e-76
WP_059084644.1 RNA polymerase subunit sigma-70 [Streptomyces scabiei] >dbj 5843.8e-76
WP_060881507.1 RNA polymerase subunit sigma-70 [Streptomyces scabiei] 5828.9e-76
WP_005480866.1 DNA-binding protein [Streptomyces bottropensis] >gb 5298.3e-68
KND30401.1 RNA polymerase sigma70 [Streptomyces stelliscabiei] 5299.2e-68
WP_046704364.1 RNA polymerase sigma70 [Streptomyces europaeiscabiei] 5211.3e-66
WP_037694590.1 DNA-directed RNA polymerase sigma-70 factor [Streptomyces sc... 5132.4e-65
KFF99726.1 RNA polymerase sigma70 [Streptomyces scabiei] 5123.8e-65
WP_086747450.1 RNA polymerase subunit sigma-70 [Streptomyces scabiei] 5115.4e-65

PSORT result

LocalizationCertaintyPSORT said
Not Clear