-- | --

IDSCAB34911 TypeCDS
From6214065 nt length1005
To6213061 aa length334
Genesig pI4.68
Definitionputative RNA polymerase sigma factor M.W (Da)36373
Note AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3363 putative RNA polymerase ECF-subfamily sigma factor5883.0e-169
coelSCO4895 putative ECF sigma factor5562.0e-159
sgrSGR_2646 putative RNA polymerase ECF-subfamily sigma factor5132.0e-146
nfarnfa5260 putative sigma factor3361.0e-93

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 217-7971.92.5e-20

Sigma70_r4_21Sigma-70, region 4136-18852.03.8e-14

NTF21Nuclear transport factor 2 (NTF2) domain207-26932.78.2e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_060878414.1 RNA polymerase subunit sigma-70 [Streptomyces scabiei] 17460.0e+00
WP_059078925.1 RNA polymerase subunit sigma-70 [Streptomyces scabiei] >dbj 17200.0e+00
WP_046918348.1 DNA-directed RNA polymerase sigma-70 factor [Streptomyces st... 16820.0e+00
WP_037694479.1 DNA-directed RNA polymerase sigma-70 factor [Streptomyces sc... 16730.0e+00
WP_005480943.1 sigma factor [Streptomyces bottropensis] >gb 16730.0e+00
WP_086749324.1 RNA polymerase subunit sigma-70 [Streptomyces scabiei] 16700.0e+00
WP_046706682.1 RNA polymerase sigma70 factor [Streptomyces europaeiscabiei] 16680.0e+00
WP_086762171.1 RNA polymerase subunit sigma-70 [Streptomyces scabiei] 16400.0e+00
WP_033527057.1 DNA-directed RNA polymerase sigma-70 factor [Streptomyces ga... 16370.0e+00
WP_086800256.1 RNA polymerase subunit sigma-70 [Streptomyces scabiei] 16350.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear