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IDSCAB35201 TypeCDS
From6176460 nt length693
To6177152 aa length230
Genesig pI10.56
Definitionputative RNA polymerase sigma factor M.W (Da)24565
Note AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3387 putative RNA polymerase ECF-subfamily sigma factor3576.0e-100
coelSCO4864 putative ECF sigma factor3331.0e-92

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2);

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 261-12546.42.2e-12

Sigma70_r4_21Sigma-70, region 4158-20941.57e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_086022950.1 RNA polymerase sigma factor [Streptomyces scabiei] 10363.6e-143
WP_086016336.1 RNA polymerase sigma factor [Streptomyces bottropensis] 9982.8e-137
WP_086751765.1 RNA polymerase sigma factor [Streptomyces scabiei] 9922.2e-136
WP_086787625.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] 9705.3e-133
WP_086803786.1 RNA polymerase sigma factor [Streptomyces scabiei] 9662.0e-132
WP_037727235.1 RNA polymerase sigma factor [Streptomyces scabiei] >gb 9624.8e-132
WP_060906475.1 RNA polymerase sigma factor [Streptomyces scabiei] 9556.4e-131
WP_060881526.1 RNA polymerase sigma factor [Streptomyces scabiei] 9556.4e-131
WP_086019223.1 RNA polymerase sigma factor [Streptomyces ipomoeae] 9421.1e-128
WP_046709968.1 RNA polymerase sigma factor [Streptomyces europaeiscabiei] 9322.0e-127

PSORT result

LocalizationCertaintyPSORT said
Not Clear