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IDSCAB37081 TypeCDS
From5973012 nt length597
To5973608 aa length198
Genesig pI9.85
Definitionputative RNA polymerase sigma factor M.W (Da)21084
Note AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_700 putative RNA polymerase ECF-subfamily sigma factor2345.0e-63

*avm, Streptomyces avermitilis;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4128-17848.06.7e-13

Sigma70_r21Sigma-70 region 225-9346.81.7e-12

Sigma70_r41Sigma-70, region 4131-17934.59.6e-09

Sigma70_ECF1ECF sigma factor22-17927.62.1e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_037725115.1 RNA polymerase sigma factor [Streptomyces scabiei] >gb 7144.8e-95
WP_060889011.1 RNA polymerase sigma factor [Streptomyces scabiei] 7076.0e-94
WP_059079067.1 RNA polymerase subunit sigma [Streptomyces scabiei] >dbj 7051.2e-93
WP_005481260.1 sigma factor [Streptomyces bottropensis] >gb 6991.0e-92
WP_046913805.1 RNA polymerase sigma factor [Streptomyces stelliscabiei] >gb... 6963.4e-92
WP_086747316.1 RNA polymerase sigma factor [Streptomyces scabiei] 6885.1e-91
WP_046706201.1 RNA polymerase sigma factor [Streptomyces europaeiscabiei] 6876.0e-91
WP_060903354.1 RNA polymerase subunit sigma [Streptomyces europaeiscabiei] 6877.0e-91
WP_086802618.1 RNA polymerase subunit sigma [Streptomyces scabiei] 6512.3e-85
WP_045559445.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] >em... 6512.3e-85

PSORT result

LocalizationCertaintyPSORT said
Not Clear