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IDSCAB37191 TypeCDS
From5954368 nt length3486
To5957853 aa length1161
GenerpoB pI4.61
DefinitionRNA polymerase beta subunit M.W (Da)128471
Note AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4914 RNA polymerase beta subunit22780.0e+00
coelSCO4654 DNA-directed RNA polymerase beta chain22770.0e+00
sgrSGR_2869 putative RNA polymerase beta subunit22560.0e+00
saceSACE_6854 DNA-directed RNA polymerase, beta subunit18460.0e+00
nfarnfa50990 putative RNA polymerase beta subunit18060.0e+00

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

RNA_pol_Rpb2_61RNA polymerase Rpb2, domain 6630-1047520.62.4e-156

RNA_pol_Rpb2_21RNA polymerase Rpb2, domain 2169-365102.81.5e-29

RNA_pol_Rpb2_31RNA polymerase Rpb2, domain 3424-49299.39.2e-29

RNA_pol_Rpb2_71RNA polymerase Rpb2, domain 71049-112395.32e-27

RNA_pol_Rpb2_451RNA polymerase beta subunit external 1 domain502-56890.94.2e-26

RNA_pol_Rpb2_11RNA polymerase beta subunit37-40979.71.8e-22

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_060906511.1 DNA-directed RNA polymerase subunit beta [Streptomyces scabi... 58920.0e+00
WP_046913802.1 DNA-directed RNA polymerase subunit beta [Streptomyces stell... 58890.0e+00
WP_005481281.1 DNA-directed RNA polymerase subunit beta [Streptomyces bottr... 58840.0e+00
WP_045559441.1 MULTISPECIES: DNA-directed RNA polymerase subunit beta [Stre... 58740.0e+00
WP_086803614.1 DNA-directed RNA polymerase subunit beta [Streptomyces scabi... 58710.0e+00
WP_059079075.1 DNA-directed RNA polymerase subunit beta [Streptomyces scabi... 58640.0e+00
WP_033528320.1 DNA-directed RNA polymerase subunit beta [Streptomyces galbu... 58620.0e+00
WP_037694062.1 DNA-directed RNA polymerase subunit beta [Streptomyces scabi... 58600.0e+00
WP_046706205.1 DNA-directed RNA polymerase subunit beta [Streptomyces europ... 58490.0e+00
WP_086755351.1 DNA-directed RNA polymerase subunit beta [Streptomyces scabi... 58480.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear