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IDSCAB38231 TypeCDS
From5847273 nt length204
To5847070 aa length67
GenecspD pI4.48
Definitionputative cold shock protein M.W (Da)7173
Note AseI frg.H
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4820 putative cold shock protein1343.0e-33
coelSCO4505 scoF2 cold shock protein1358.0e-34
sgrSGR_3002 putative cold shock protein1297.0e-32
saceSACE_2658 cold-shock DNA-binding domain protein1126.0e-27

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

CSD1'Cold-shock' DNA-binding domain3-66110.81.9e-32

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_030379745.1 MULTISPECIES: cold-shock protein [Streptomyces] 3441.5e-42
WP_003992177.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3422.9e-42
WP_004984723.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3414.0e-42
WP_003974443.1 MULTISPECIES: cold-shock protein [Streptomycetaceae] >ref 3415.0e-42
WP_018543814.1 cold-shock protein [Streptomyces sp. LaPpAH-108] 3415.0e-42
WP_069779342.1 cold-shock protein [Streptomyces puniciscabiei] >gb 3406.3e-42
WP_023547521.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3406.5e-42
WP_037627265.1 cold-shock protein [Streptomyces aureus] 3406.9e-42
WP_043442843.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3398.5e-42
WP_024760080.1 cold-shock protein [Streptomyces exfoliatus] 3398.5e-42

PSORT result

LocalizationCertaintyPSORT said
Not Clear