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IDSCAB38881 TypeCDS
From5789384 nt length1194
To5790577 aa length397
Gene pI8.46
Definitionhypothetical protein M.W (Da)43271
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4753 hypothetical protein7160.0e+00
coelSCO3299 hypothetical protein7670.0e+00
sgrSGR_4185 conserved hypothetical protein7240.0e+00
saceSACE_3596 hypothetical protein5361.0e-153
nfarnfa13690 hypothetical protein5052.0e-144

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

RtcB1tRNA-splicing ligase RtcB29-397432.51.8e-129

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_060878505.1 RtcB family protein [Streptomyces scabiei] 20210.0e+00
WP_060906542.1 RtcB family protein [Streptomyces scabiei] 20200.0e+00
WP_059084612.1 RtcB family protein [Streptomyces scabiei] >dbj 20060.0e+00
WP_046919322.1 RtcB family protein [Streptomyces stelliscabiei] >gb 19910.0e+00
WP_045559294.1 MULTISPECIES: RtcB family protein [Streptomyces] >emb 19640.0e+00
WP_060883730.1 RtcB family protein [Streptomyces sp. 96-12] 19620.0e+00
WP_060903846.1 RtcB family protein [Streptomyces europaeiscabiei] 19610.0e+00
WP_037688801.1 RtcB family protein [Streptomyces scabiei] >gb 19540.0e+00
WP_060892517.1 RtcB family protein [Streptomyces europaeiscabiei] 19530.0e+00
WP_085574033.1 RtcB family protein [Streptomyces sp. 13-12-16] >gb 19400.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear