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IDSCAB3921 TypeCDS
From9695720 nt length945
To9694776 aa length314
Genesig pI5.14
Definitionputative RNA polymerase sigma factor M.W (Da)33999
Note AseI frg.I
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_424 putative RNA polymerase ECF-subfamily sigma factor3471.0e-96
coelSCO0159 putative ECF sigma factor3232.0e-89
sgrSGR_3571 putative RNA polymerase ECF-subfamily sigma factor4991.0e-142
saceSACE_1418 putative ECF-family RNA polymerase sigma factor2588.0e-70
nfarnfa52790 putative sigma factor2684.0e-73

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 211-7459.51.9e-16

Sigma70_r4_21Sigma-70, region 4111-16149.32.6e-13

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_037725050.1 RNA polymerase sigma factor SigJ [Streptomyces scabiei] >gb 16160.0e+00
WP_060877684.1 RNA polymerase sigma factor SigJ [Streptomyces scabiei] 16150.0e+00
WP_059078145.1 RNA polymerase sigma factor SigJ [Streptomyces scabiei] >dbj... 15840.0e+00
WP_033528943.1 RNA polymerase sigma factor SigJ [Streptomyces galbus] 15440.0e+00
WP_045563390.1 MULTISPECIES: RNA polymerase sigma factor SigJ [Streptomyces... 15410.0e+00
WP_060882285.1 MULTISPECIES: RNA polymerase sigma factor SigJ [Streptomyces... 15380.0e+00
WP_086801422.1 RNA polymerase sigma-70 factor [Streptomyces scabiei] 15320.0e+00
WP_086760146.1 RNA polymerase sigma-70 factor [Streptomyces scabiei] 15110.0e+00
WP_055524143.1 RNA polymerase sigma-70 factor [Streptomyces ossamyceticus] 15060.0e+00
WP_055540706.1 RNA polymerase sigma-70 factor [Streptomyces neyagawaensis] 14940.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear