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IDSCAB50821 TypeCDS
From4495081 nt length384
To4494698 aa length127
GenecspB pI5.89
Definitionputative cold shock protein M.W (Da)13472
Note AseI frg.D
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3907 putative cold shock protein2342.0e-63
coelSCO4325 cspB cold shock protein B2381.0e-64
sgrSGR_3176 putative cold shock protein2364.0e-64
saceSACE_0594 cold-shock DNA-binding domain protein1412.0e-35
nfarnfa6390 putative cold shock protein1451.0e-36

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

CSD1'Cold-shock' DNA-binding domain3-6375.42.2e-21

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_037705295.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 6493.9e-87
WP_045556039.1 MULTISPECIES: cold-shock protein [Streptomyces] >emb 6442.5e-86
WP_033525927.1 cold-shock protein [Streptomyces galbus] 6415.4e-86
WP_086764151.1 cold-shock protein [Streptomyces scabiei] 6372.4e-85
WP_009310488.1 cold-shock protein [Streptomyces ipomoeae] >gb 6347.2e-85
WP_030595725.1 cold-shock protein [Streptomyces fulvoviolaceus] 6347.8e-85
WP_055521981.1 MULTISPECIES: cold-shock protein [Streptomyces] 6278.0e-84
WP_004000281.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 6278.2e-84
WP_067434904.1 cold-shock protein [Streptomyces lincolnensis] >gb 6279.2e-84
WP_077798017.1 cold-shock protein [Streptomyces sp. JHA26] 6261.4e-83

PSORT result

LocalizationCertaintyPSORT said
Not Clear