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IDSCAB80681 TypeCDS
From1198055 nt length561
To1197495 aa length186
Genesig pI11.33
Definitionputative RNA polymerase sigma factor M.W (Da)20363
Note AseI frg.A
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_527 putative RNA polymerase ECF-subfamily sigma factor2439.0e-66
saceSACE_0141 ECF subfamily sigma factor1613.0e-41

*avm, Streptomyces avermitilis; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4132-18046.32.3e-12

Sigma70_r41Sigma-70, region 4134-18232.34.6e-08

Sigma70_r21Sigma-70 region 231-10032.26e-08

Sigma70_ECF1ECF sigma factor135-18530.04e-07

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_086747432.1 RNA polymerase sigma factor [Streptomyces scabiei] 5573.1e-71
WP_059081838.1 RNA polymerase sigma factor [Streptomyces scabiei] >dbj 5564.6e-71
WP_037690853.1 RNA polymerase sigma factor [Streptomyces scabiei] >gb 5521.6e-70
WP_005475066.1 RNA polymerase sigma factor [Streptomyces bottropensis] >gb 5486.2e-70
WP_046918593.1 RNA polymerase sigma factor [Streptomyces stelliscabiei] >gb... 5487.2e-70
WP_086760761.1 RNA polymerase sigma factor [Streptomyces scabiei] 5443.1e-69
WP_037735232.1 RNA polymerase sigma factor [Streptomyces mirabilis] 5425.4e-69
WP_033530355.1 RNA polymerase sigma factor [Streptomyces galbus] 5349.7e-68
WP_030234256.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] 5349.7e-68
WP_045560382.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] >em... 5312.2e-67

PSORT result

LocalizationCertaintyPSORT said
Not Clear