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IDSCO0194 TypeCDS
From8482550 nt length609
To8481942 aa length202
Gene pI8.76
Definitionputative sigma factor M.W (Da)22300
NoteSCJ12.06 AseI frg.J
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_1215 putative RNA polymerase ECF-subfamily sigma factor (sig17)1922.0e-50
samSAM23877_7075 RNA polymerase sigma factor2943.0e-103
scabSCAB85121 putative RNA polymerase sigma factor2117.0e-56

*avm, Streptomyces avermitilis; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 239-10765.42.7e-18

Sigma70_r41Sigma-70, region 4141-18961.24.3e-17

Sigma70_r4_21Sigma-70, region 4136-18854.75.3e-15

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_011026917.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 8312.1e-111
WP_030862116.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 8242.0e-110
WP_136207246.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8201.0e-109
WP_210983539.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8191.1e-109
WP_121717255.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8191.3e-109
WP_003978673.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 8191.5e-109
WP_210974980.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7851.9e-104
WP_061441040.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7824.8e-104
WP_159323426.1 sigma-70 family RNA polymerase sigma factor [Streptomyces te... 7826.6e-104
WP_164457505.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 7712.6e-102

PSORT result

LocalizationCertaintyPSORT said
Not Clear