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IDSCO0600 TypeCDS
From8027649 nt length846
To8026804 aa length281
Gene pI4.67
Definitionsig8 RNA polymerase sigma factor sig8 M.W (Da)31547
NoteSCF55.24 AseI frg.F
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_741 putative RNA polymerase sigma factor3922.0e-110
sgrSGR_733 putative RNA polymerase sigma factor3477.0e-97
samSAM23877_6930 RNA polymerase sigma factor5350.0e+00
scabSCAB87111 putative RNA polymerase sigma factor4475.0e-127

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4227-27562.02.5e-17

Sigma70_r21Sigma-70 region 258-12859.22.3e-16

Sigma70_r31Sigma-70 region 3138-20452.43.9e-14

Sigma70_r4_21Sigma-70, region 4226-27336.13.3e-09

KORA1TrfB plasmid transcriptional repressor219-27228.51.2e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003978261.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 12213.3e-168
CAB55833.1 SigJ protein [Streptomyces coelicolor A3(2)] 12115.1e-167
WP_109030871.1 RNA polymerase sigma factor SigF [Streptomyces rubrogriseus]... 12083.2e-166
WP_161377527.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 11997.6e-165
WP_226030217.1 RNA polymerase sigma factor SigF [Streptomyces hyderabadensi... 11961.8e-164
WP_087788358.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 11961.9e-164
WP_164246906.1 RNA polymerase sigma factor SigF [Streptomyces coelicoflavus... 11961.9e-164
WP_087804629.1 RNA polymerase sigma factor SigF [Streptomyces sp. CS113] >g... 11952.4e-164
WP_189743321.1 RNA polymerase sigma factor SigF [Streptomyces tendae] >dbj 11952.4e-164
WP_030189735.1 RNA polymerase sigma factor SigF [Streptomyces violaceorubid... 11934.5e-164

PSORT result

LocalizationCertaintyPSORT said
Not Clear