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IDSCO0632 TypeCDS
From7993775 nt length585
To7993191 aa length194
Gene pI8.69
Definitionputative RNA polymerase sigma factor M.W (Da)21852
NoteSCF56.16 AseI frg.F
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
sgrSGR_5884 putative RNA polymerase ECF-subfamily sigma factor2907.0e-80
scabSCAB10871 putative RNA polymerase ECF-subfamily sigma factor2805.0e-77

*sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 236-10053.21.6e-14

Sigma70_r41Sigma-70, region 4139-18844.85.9e-12

Sigma70_r4_21Sigma-70, region 4133-18644.67.6e-12

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_011027261.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 8961.3e-121
WP_121708891.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8942.5e-121
WP_210983609.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8925.1e-121
WP_093455453.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 8917.9e-121
MYS74657.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp. SID... 8901.1e-120
WP_003978230.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 8873.1e-120
WP_109030842.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ru... 8873.5e-120
WP_007442114.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 8864.3e-120
WP_087804685.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8864.7e-120
NEB09344.1 sigma-70 family RNA polymerase sigma factor [Streptomyces coelico... 8856.3e-120

PSORT result

LocalizationCertaintyPSORT said
Not Clear