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IDSCO0895 TypeCDS
From7725418 nt length1020
To7726437 aa length339
GenehrdC pI7.43
DefinitionRNA polymerase principal sigma factor HrdC. M.W (Da)38173
Note AseI frg.M
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
samSAM23877_6642 RNA polymerase principal sigma factor HrdC5570.0e+00

*sam, Streptomyces ambofaciens ATCC 23877;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r31Sigma-70 region 3185-25979.51.3e-22

Sigma70_r21Sigma-70 region 2106-17569.31.6e-19

Sigma70_r41Sigma-70, region 4276-32756.11.7e-15

Sigma70_r1_21Sigma-70 factor, region 1.237-6947.99.1e-13

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_030869168.1 sigma-70 family RNA polymerase sigma factor [Streptomyces vi... 14910.0e+00
WP_003977963.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 14870.0e+00
WP_106517525.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 14850.0e+00
WP_087805178.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 14810.0e+00
WP_164279490.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ru... 14800.0e+00
MYS75618.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp. SID... 14780.0e+00
WP_109031430.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ru... 14760.0e+00
WP_102927676.1 sigma-70 family RNA polymerase sigma factor [Streptomyces di... 14730.0e+00
WP_176152892.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 14730.0e+00
WP_226027753.1 sigma-70 family RNA polymerase sigma factor [Streptomyces hy... 14720.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear