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IDSCO0942 TypeCDS
From7679378 nt length555
To7678824 aa length184
Gene pI7.73
Definitionputative RNA polymerase sigma factor M.W (Da)20206
NoteSCM10.30 AseI frg.M
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_7292 putative RNA polymerase ECF-subfamily sigma factor2562.0e-69
sgrSGR_718 putative RNA polymerase ECF-subfamily sigma factor2123.0e-56
samSAM23877_6598 putative RNA polymerase sigma factor3051.0e-107
scabSCAB11621 putative RNA polymerase ECF-subfamily sigma factor2901.0e-79

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 225-9255.92.4e-15

Sigma70_r41Sigma-70, region 4126-17349.02.9e-13

Sigma70_r4_21Sigma-70, region 4121-17248.44.9e-13

Sigma70_ECF1ECF sigma factor44-16832.85.3e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_007389266.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 6804.9e-89
WP_003977918.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 6744.9e-88
WP_104632754.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6711.1e-87
WP_217166934.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6692.2e-87
WP_030186994.1 sigma-70 family RNA polymerase sigma factor [Streptomyces vi... 6674.4e-87
WP_164245144.1 sigma-70 family RNA polymerase sigma factor [Streptomyces co... 6675.6e-87
WP_133885061.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6659.0e-87
WP_115746246.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6659.6e-87
WP_125627619.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6631.9e-86
WP_061446726.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 6632.0e-86

PSORT result

LocalizationCertaintyPSORT said
Not Clear