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IDSCO1564 TypeCDS
From6992735 nt length501
To6993235 aa length166
Gene pI9.63
Definitionputative RNA polymerase sigma factor M.W (Da)18464
NoteSCL11.20c AseI frg.L
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_6785 putative RNA polymerase ECF-subfamily sigma factor1622.0e-41
sgrSGR_5974 putative RNA polymerase ECF-subfamily sigma factor1483.0e-37
samSAM23877_1619 RNA polymerase sigma factor2225.0e-76
scabSCAB74361 putative RNA polymerase sigma factor1961.0e-51

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 25-7223.82.6e-05

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_189283949.1 sigma-70 family RNA polymerase sigma factor [Streptomyces an... 5186.5e-65
EFD70349.1 RNA polymerase sigma factor [Streptomyces lividans TK24] 5125.7e-64
WP_011027851.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 5116.6e-64
WP_121713480.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 5064.0e-63
WP_109033717.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ru... 5031.4e-62
WP_159325300.1 sigma-70 family RNA polymerase sigma factor [Streptomyces te... 4909.5e-61
WP_055468304.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 4803.6e-59
WP_087791916.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 4779.0e-59
WP_007390224.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 4771.1e-58
KPC68552.1 RNA polymerase sigma factor [Streptomyces sp. NRRL WC-3753] 4761.5e-58

PSORT result

LocalizationCertaintyPSORT said
Not Clear