ID	SCO2639	Type	CDS
From	5796850	nt length	627
To	5797476	aa length	208
Gene		pI	9.89
Definition	putative RNA polymerase sigma factor	M.W (Da)	22946
Note	SC8E4A.09c	AseI frg.	C
SignalP v.4.0	Non-secretory protein | plot	Category

Orthologs (if any)

Pfam search result

	Model	No.	Description	Position (aa)	Score	E-value
	Sigma70_r4	1	Sigma-70, region 4	152-200	59.3	1.8e-16
	Sigma70_r4_2	1	Sigma-70, region 4	147-198	51.6	4.9e-14
	Sigma70_ECF	1	ECF sigma factor	96-197	26.3	5.3e-06
	Sigma70_r2	1	Sigma-70 region 2	70-119	22.4	6.9e-05

BLAST search result (top 10 hits)

ID	Description	Score	E-value
MYU42167.1	sigma-70 family RNA polymerase sigma factor [Streptomyces sp. SID...	984	1.5e-134
MYS73737.1	sigma-70 family RNA polymerase sigma factor [Streptomyces sp. SID...	971	1.6e-132
MZE49003.1	sigma-70 family RNA polymerase sigma factor [Streptomyces sp. SID...	942	3.3e-128
MZG14237.1	sigma-70 family RNA polymerase sigma factor [Streptomyces sp. SID...	940	7.7e-128
OWA08551.1	RNA polymerase subunit sigma-70 [Streptomyces sp. CS159]	938	1.7e-127
QFX83918.1	sigma-70 family RNA polymerase sigma factor [Streptomyces sp. SYP...	923	3.1e-125
AXL88665.1	RNA polymerase subunit sigma-70 [Streptomyces sp. CB09001]	893	9.7e-121
MZE74215.1	sigma-70 family RNA polymerase sigma factor [Streptomyces sp. SID...	846	1.9e-113
WP_003976162.1	MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S...	831	1.1e-111
GGL27008.1	RNA polymerase sigma factor [Streptomyces anthocyanicus] >dbj	830	1.3e-111

PSORT result

Localization	Certainty	PSORT said
Not Clear

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