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IDSCO2747 TypeCDS
From5674517 nt length1956
To5672562 aa length651
Gene pI9.66
Definitionbifunctional carbohydrate binding and transport protein M.W (Da)65809
NoteSCC57A.18 AseI frg.C
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_5318 putative D-ribose ABC transporter substrate-binding protein/permease protein8570.0e+00
sgrSGR_1095 putative D-ribose ABC transporter substrate-binding/permease protein9340.0e+00
samSAM23877_2772 Ribose ABC transport system%2C permease protein RbsC11540.0e+00
scabSCAB58711 putative LacI-family transcriptional regulator, ribose operon repressor3631.0e-101
saceSACE_5660 putative D-ribose ABC transporter permease protein5624.0e-161

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Peripla_BP_41Periplasmic binding protein domain376-628227.71.5e-67

BPD_transp_21Branched-chain amino acid transport system / permease component52-315159.67.5e-47

Peripla_BP_11Periplasmic binding proteins and sugar binding domain of LacI family374-63888.83.6e-25

Peripla_BP_31Periplasmic binding protein-like domain497-64455.57.5e-15

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003976053.1 MULTISPECIES: substrate-binding domain-containing protein [S... 28460.0e+00
WP_121716181.1 substrate-binding domain-containing protein [Streptomyces sp... 28400.0e+00
WP_202492462.1 MULTISPECIES: substrate-binding domain-containing protein [S... 28370.0e+00
WP_109032821.1 substrate-binding domain-containing protein [Streptomyces ru... 28270.0e+00
WP_203695579.1 substrate-binding domain-containing protein [Streptomyces ru... 28180.0e+00
WP_115742219.1 substrate-binding domain-containing protein [Streptomyces sp... 28110.0e+00
NHI09533.1 D-ribose ABC transporter permease [Streptomyces sp. KO7888] 27860.0e+00
WP_197924467.1 substrate-binding domain-containing protein [Streptomyces sp... 27830.0e+00
WP_030179762.1 substrate-binding domain-containing protein [Streptomyces vi... 27820.0e+00
WP_125631480.1 substrate-binding domain-containing protein [Streptomyces sp... 27800.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear