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IDSCO2954 TypeCDS
From5454770 nt length585
To5455354 aa length194
Gene pI9.52
Definitionputative RNA polymerase sigma factor M.W (Da)21718
NoteSCE59.13c AseI frg.E
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_5123 putative RNA polymerase ECF-subfamily sigma factor3091.0e-85
samSAM23877_2991 ECF RNA polymerase sigma factor SigL3512.0e-126
scabSCAB55901 putative RNA polymerase sigma factor3613.0e-101
saceSACE_5521 RNA polymerase, sigma-24 subunit, ECF subfamily1224.0e-29
nfarnfa55120 putative sigma factor1283.0e-31

*avm, Streptomyces avermitilis; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 236-10458.24.6e-16

Sigma70_r41Sigma-70, region 4136-18451.45.1e-14

Sigma70_r4_21Sigma-70, region 4132-18234.79.4e-09

Sigma70_ECF1ECF sigma factor88-17925.59.2e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003975857.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 10011.1e-137
AQS69332.1 RNA polymerase subunit sigma [Streptomyces pactum] >gb 9975.3e-137
9966.9e-137
PVD11039.1 RNA polymerase subunit sigma [Streptomyces sp. CS207] >gb 9941.7e-136
WP_210960741.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 9914.4e-136
KFG75254.1 RNA polymerase sigma factor SigL [Streptomyces mutabilis] 9914.4e-136
WP_153179613.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 9905.7e-136
GHA69686.1 RNA polymerase sigma factor [Streptomyces tendae] 9926.4e-136
EOY48013.1 RNA polymerase sigma-70 factor, ECF subfamily [Streptomyces livid... 9871.9e-135
GGQ02896.1 RNA polymerase sigma factor [Streptomyces mutabilis] 9882.7e-135

PSORT result

LocalizationCertaintyPSORT said
Not Clear