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IDSCO3299 TypeCDS
From5018960 nt length1194
To5020153 aa length397
Gene pI9.09
Definitionhypothetical protein M.W (Da)43187
NoteSCE15.16c AseI frg.E
SignalP v.4.0Non-secretory protein | plot Categorysimilar to unknown proteins


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4753 hypothetical protein7260.0e+00
sgrSGR_4185 conserved hypothetical protein7260.0e+00
samSAM23877_4256 RNA-splicing ligase RtcB7930.0e+00
scabSCAB38881 hypothetical protein7670.0e+00
saceSACE_3596 hypothetical protein5215.0e-149
nfarnfa13690 hypothetical protein5001.0e-142

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

RtcB1tRNA-splicing ligase RtcB29-397433.86.9e-130

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_011028892.1 MULTISPECIES: RtcB family protein [Streptomyces] >gb 20330.0e+00
WP_030871325.1 MULTISPECIES: RtcB family protein [Streptomyces] >lcl 20320.0e+00
WP_191849682.1 RtcB family protein [Streptomyces anthocyanicus] >dbj 20270.0e+00
WP_109034941.1 RtcB family protein [Streptomyces rubrogriseus] >gb 20240.0e+00
WP_087807915.1 RtcB family protein [Streptomyces sp. CS113] >gb 20230.0e+00
WP_164279277.1 RtcB family protein [Streptomyces rubrogriseus] >gb 20220.0e+00
WP_115742677.1 RtcB family protein [Streptomyces sp. CB09001] >gb 20220.0e+00
WP_127894623.1 RtcB family protein [Streptomyces sp. S10(2018)] 20220.0e+00
WP_161381897.1 MULTISPECIES: RtcB family protein [unclassified Streptomyces... 20200.0e+00
WP_003975535.1 MULTISPECIES: RtcB family protein [Streptomyces] >gb 20200.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear