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IDSCO3323 TypeCDS
From4992066 nt length534
To4991533 aa length177
Gene pI6.02
Definitionputative RNA polymerase sigma factor M.W (Da)20035
NoteSCE68.21 AseI frg.E
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4735 putative RNA polymerase ECF-subfamily sigma factor3222.0e-89
sgrSGR_4151 RNA polymerase ECF-subfamily sigma factor3499.0e-98
samSAM23877_4236 ECF sigma factor3543.0e-126
scabSCAB39121 putative RNA polymerase ECF-subfamily sigma factor3539.0e-99
saceSACE_6951 putative RNA polymerase sigma factor2022.0e-53

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 218-8563.31.2e-17

Sigma70_r4_21Sigma-70, region 4117-16851.74.6e-14

Sigma70_r41Sigma-70, region 4123-16839.62.4e-10

Sigma70_ECF1ECF sigma factor2-15832.75.9e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_203697976.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ru... 9279.1e-126
MYS71241.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp. SID... 9191.0e-125
WP_202493264.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 9271.0e-125
WP_003975513.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 9261.8e-125
GGL84760.1 hypothetical protein GCM10010095_81910 [Streptomyces anthocyanic... 9241.9e-125
WP_164279435.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ru... 9261.9e-125
WP_202555008.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 9191.2e-124
WP_217131433.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 9221.4e-124
OSC70965.1 RNA polymerase subunit sigma-24 [Streptomyces sp. 4F] >gb 9111.9e-124
AZM80112.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp. KPB... 9112.1e-124

PSORT result

LocalizationCertaintyPSORT said
Not Clear