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IDSCO3356 TypeCDS
From4951904 nt length534
To4951371 aa length177
Gene pI5.45
DefinitionECF sigma factor M.W (Da)20493
NoteSCE94.07 AseI frg.E
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4706 putative RNA polymerase ECF-subfamily sigma factor2439.0e-66
sgrSGR_4125 putative RNA polymerase ECF-subfamily sigma factor2853.0e-78
samSAM23877_4203 RNA polymerase sigma-E factor3087.0e-110
scabSCAB39411 putative RNA polymerase sigma factor3014.0e-83

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4102-15360.67.6e-17

Sigma70_r41Sigma-70, region 4106-15551.45e-14

Sigma70_r21Sigma-70 region 214-7633.91.8e-08

Sigma70_ECF1ECF sigma factor93-15722.10.0001

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_007452279.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7566.7e-101
WP_030404782.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7567.0e-101
WP_003975479.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7567.1e-101
WP_164250256.1 SigE family RNA polymerase sigma factor [Streptomyces coelic... 7532.5e-100
WP_053665788.1 SigE family RNA polymerase sigma factor [Streptomyces sp. NR... 7523.5e-100
WP_104632007.1 SigE family RNA polymerase sigma factor [Streptomyces sp. MH... 7514.8e-100
WP_016326522.1 SigE family RNA polymerase sigma factor [Streptomyces livida... 7506.2e-100
WP_189739388.1 SigE family RNA polymerase sigma factor [Streptomyces tendae... 7471.8e-99
WP_019331022.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7393.2e-98
WP_189561870.1 SigE family RNA polymerase sigma factor [Streptomyces pilosu... 7361.0e-97

PSORT result

LocalizationCertaintyPSORT said
Not Clear