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IDSCO3450 TypeCDS
From4856234 nt length606
To4856839 aa length201
Gene pI6.25
Definitionputative RNA polymerase sigma factor (ECF subfamily) M.W (Da)22216
NoteSCE46.07c AseI frg.E
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 242-9972.12.1e-20

Sigma70_r4_21Sigma-70, region 4134-18558.34.1e-16

Sigma70_r41Sigma-70, region 4138-18751.54.9e-14

Sigma70_ECF1ECF sigma factor81-18929.36.3e-07

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_011028991.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] >gb... 8131.1e-108
RPK59394.1 ECF RNA polymerase sigma factor SigH [Streptomyces sp. ADI96-15] 7312.3e-96
WP_103503226.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] >gb... 7215.9e-95
WP_037787051.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] >gb... 7121.5e-93
NEA59355.1 RNA polymerase sigma factor [Streptomyces sp. SID13666] 7024.3e-92
WP_211039804.1 RNA polymerase sigma factor [Streptomyces tardus] >lcl 7007.7e-92
WP_103541436.1 RNA polymerase sigma factor [Streptomyces sp. SM1] 6964.0e-91
WP_164184062.1 RNA polymerase sigma factor [Streptomyces sp. 604F] >lcl 6954.8e-91
WP_214900706.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 6946.3e-91
WP_103517833.1 MULTISPECIES: RNA polymerase sigma factor [unclassified Stre... 6947.7e-91

PSORT result

LocalizationCertaintyPSORT said
Not Clear