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IDSCO3613 TypeCDS
From4674663 nt length573
To4675235 aa length190
Gene pI9.89
Definitionputative RNA polymerase sigma factor M.W (Da)20903
NoteSC66T3.24c AseI frg.H
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4561 putative RNA polymerase ECF-subfamily sigma factor2931.0e-80
sgrSGR_3370 putative RNA polymerase ECF-subfamily sigma factor3307.0e-92
samSAM23877_4007 putative RNA polymerase sigma factor RfaY3539.0e-127
scabSCAB41621 putative RNA polymerase sigma factor3431.0e-95
saceSACE_1517 RNA polymerase sigma factor1131.0e-26

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4130-18247.21.2e-12

Sigma70_r41Sigma-70, region 4135-18343.41.7e-11

Sigma70_r21Sigma-70 region 238-10243.32e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
GHC00613.1 RNA polymerase sigma factor [Streptomyces anthocyanicus] 7786.8e-104
WP_003975326.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7788.5e-104
EOY48569.1 putative RNA polymerase ECF-subfamily sigma factor [Streptomyces ... 7771.8e-103
GGL30969.1 RNA polymerase sigma factor [Streptomyces anthocyanicus] >dbj 7742.6e-103
WP_226028303.1 SigE family RNA polymerase sigma factor [Streptomyces hydera... 7753.0e-103
WP_030867873.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7744.0e-103
WP_173943909.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7774.8e-103
WP_030183825.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7701.6e-102
WP_133888855.1 SigE family RNA polymerase sigma factor [Streptomyces sp. BK... 7682.9e-102
WP_115746459.1 SigE family RNA polymerase sigma factor [Streptomyces sp. CB... 7665.3e-102

PSORT result

LocalizationCertaintyPSORT said
Not Clear