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IDSCO3709 TypeCDS
From4581637 nt length555
To4582191 aa length184
Gene pI9.27
Definitionputative ECF sigma factor M.W (Da)20461
NoteSCH35.15 AseI frg.H
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4427 putative RNA polymerase ECF-subfamily sigma factor1792.0e-46
sgrSGR_3223 putative RNA polymerase ECF-subfamily sigma factor1914.0e-50
scabSCAB44601 putative RNA polymerase sigma factor1846.0e-48

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 222-8649.62.3e-13

Sigma70_r4_21Sigma-70, region 4111-16247.87.3e-13

Sigma70_r41Sigma-70, region 4115-16228.85.7e-07

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003975229.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 8253.6e-111
EOY48671.1 hypothetical protein SLI_3958 [Streptomyces lividans 1326] >dbj 8239.7e-111
WP_193485206.1 SigE family RNA polymerase sigma factor [Streptomyces anthoc... 8169.1e-110
GHC01195.1 RNA polymerase sigma24 factor [Streptomyces anthocyanicus] 8151.7e-109
WP_121717193.1 SigE family RNA polymerase sigma factor [Streptomyces sp. E5... 8132.7e-109
WP_087790161.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 8081.8e-108
WP_108987285.1 SigE family RNA polymerase sigma factor [Streptomyces coelic... 8039.2e-108
WP_007451773.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 8021.2e-107
MYS75592.1 SigE family RNA polymerase sigma factor [Streptomyces sp. SID5926... 7951.5e-106
WP_109029299.1 SigE family RNA polymerase sigma factor [Streptomyces rubrog... 7933.2e-106

PSORT result

LocalizationCertaintyPSORT said
Not Clear