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IDSCO3736 TypeCDS
From4558281 nt length492
To4558772 aa length163
Gene pI10.62
Definitionputative RNA polymerase ECF sigma factor M.W (Da)19000
NoteSCH22A.14c AseI frg.H
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_93 putative RNA polymerase ECF-subfamily sigma factor2561.0e-69
samSAM23877_3909 RNA polymerase ECF sigma factor3213.0e-115
scabSCAB23321 putative RNA polymerase sigma factor2709.0e-74

*avm, Streptomyces avermitilis; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4101-15143.81.4e-11

Sigma70_r21Sigma-70 region 212-7643.02.6e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003975205.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] >gb... 7347.0e-98
WP_153178812.1 MULTISPECIES: RNA polymerase sigma factor [unclassified Stre... 7302.2e-97
WP_053134308.1 RNA polymerase sigma factor [Streptomyces ambofaciens] >gb 7302.7e-97
WP_164367121.1 RNA polymerase sigma factor [Streptomyces diastaticus] >gb 7293.5e-97
WP_043371515.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] >gb... 7276.3e-97
WP_127177711.1 RNA polymerase sigma factor [Streptomyces griseoviridis] >gb... 7277.9e-97
WP_122616678.1 MULTISPECIES: RNA polymerase sigma factor [unclassified Stre... 7269.3e-97
WP_061443493.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] >gb... 7251.3e-96
WP_161332684.1 RNA polymerase sigma factor [Streptomyces sp. SID5789] >gb 7251.5e-96
WP_003991661.1 RNA polymerase sigma factor [Streptomyces viridochromogenes]... 7251.5e-96

PSORT result

LocalizationCertaintyPSORT said
Not Clear