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IDSCO4096 TypeCDS
From4173372 nt length2223
To4171150 aa length740
Gene pI9.26
DefinitionATP-dependent RNA helicase M.W (Da)81413
NoteSCD25.32 AseI frg.D
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4123 putative ATP-dependent RNA helicase8140.0e+00
sgrSGR_3892 putative ATP-dependent RNA helicase8990.0e+00
samSAM23877_3583 ATP-dependent RNA helicase9490.0e+00
scabSCAB47991 putative ATP-dependent RNA helicase8310.0e+00

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

DEAD1DEAD/DEAH box helicase85-253151.41.9e-44

Helicase_C1Helicase conserved C-terminal domain297-39583.89.4e-24

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
23460.0e+00
MYS78518.1 DEAD/DEAH box helicase [Streptomyces sp. SID5926] 23380.0e+00
AIJ14550.2 ATP-dependent RNA helicase [Streptomyces lividans TK24] >gb 23370.0e+00
GGL71497.1 hypothetical protein GCM10010095_65270 [Streptomyces anthocyanic... 23240.0e+00
AXL89889.1 RNA helicase [Streptomyces sp. CB09001] 23150.0e+00
OWA07490.1 RNA helicase, partial [Streptomyces sp. CS113] 23130.0e+00
OWA14243.1 RNA helicase [Streptomyces sp. CS159] 22910.0e+00
MZE42680.1 DEAD/DEAH box helicase [Streptomyces sp. SID5477] 22890.0e+00
WP_187439092.1 DEAD/DEAH box helicase, partial [Streptomyces coelicolor] 22830.0e+00
WP_168715457.1 DEAD/DEAH box helicase, partial [Streptomyces sp. LRa12] 22810.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear