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IDSCO4117 TypeCDS
From4144189 nt length2064
To4146252 aa length687
Gene pI5.1
Definitionputative membrane protein M.W (Da)70939
NoteSCD72A.03 AseI frg.D
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
sgrSGR_3904 conserved hypothetical protein4095.0e-115
samSAM23877_3570 putative membrane protein6130.0e+00
scabSCAB49101 putative membrane protein4656.0e-132
saceSACE_6488 hypothetical protein1551.0e-38

*sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

NPCBM1NPCBM/NEW2 domain549-68599.91.2e-28

Sigma70_r21Sigma-70 region 2138-20642.15e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_011029445.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 15400.0e+00
WP_173943992.1 sigma-70 family RNA polymerase sigma factor [Streptomyces co... 15400.0e+00
WP_189284844.1 sigma-70 family RNA polymerase sigma factor [Streptomyces an... 15350.0e+00
WP_136209466.1 sigma-70 family RNA polymerase sigma factor, partial [Strept... 15300.0e+00
GGL71363.1 hypothetical protein GCM10010095_65050 [Streptomyces anthocyanic... 15240.0e+00
WP_046247938.1 sigma-70 family RNA polymerase sigma factor, partial [Strept... 15200.0e+00
WP_037898289.1 sigma-70 family RNA polymerase sigma factor, partial [Strept... 15200.0e+00
WP_210985350.1 sigma-70 family RNA polymerase sigma factor, partial [Strept... 15190.0e+00
WP_193485320.1 sigma-70 family RNA polymerase sigma factor [Streptomyces an... 15180.0e+00
WP_003974855.1 sigma-70 family RNA polymerase sigma factor, partial [Strept... 15180.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear