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IDSCO4198 TypeCDS
From4060146 nt length426
To4059721 aa length141
Gene pI4.69
Definitionputative DNA-binding protein M.W (Da)15476
Note2SCD46.12 AseI frg.D
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4012 putative DNA-binding protein1844.0e-48
sgrSGR_3987 putative DNA-binding protein1873.0e-49
samSAM23877_3498 putative DNA-binding protein2368.0e-82
scabSCAB49841 putative DNA-binding protein2292.0e-61
saceSACE_6990 transcriptional regulator, XRE family1274.0e-31
nfarnfa52090 putative DNA-binding protein1173.0e-28

*avm, Streptomyces avermitilis; sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

HTH_31Helix-turn-helix13-6555.34.4e-15

HTH_311Helix-turn-helix domain9-6454.31.1e-14

HTH_191Helix-turn-helix domain10-6944.11.5e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
EFD67852.1 DNA-binding protein [Streptomyces lividans TK24] 7211.7e-96
WP_011029496.1 MULTISPECIES: helix-turn-helix domain-containing protein [St... 7192.4e-96
EOY49147.1 Transcriptional regulator, XRE family [Streptomyces lividans 1326... 7193.4e-96
WP_037897639.1 MULTISPECIES: helix-turn-helix domain-containing protein [St... 7167.4e-96
WP_121715215.1 helix-turn-helix domain-containing protein [Streptomyces sp.... 7132.2e-95
WP_193487463.1 helix-turn-helix domain-containing protein [Streptomyces ant... 7122.6e-95
WP_115743339.1 helix-turn-helix domain-containing protein [Streptomyces sp.... 7123.0e-95
WP_109035143.1 helix-turn-helix domain-containing protein [Streptomyces rub... 7105.1e-95
WP_125630434.1 MULTISPECIES: helix-turn-helix domain-containing protein [un... 6742.0e-89
WP_102928654.1 helix-turn-helix domain-containing protein [Streptomyces dia... 6716.2e-89

PSORT result

LocalizationCertaintyPSORT said
Not Clear